How did you apply the Swarm Commander? I've never used Swarm Commander, but I've used lemongrass oil to invite swarms into empty boxes, and the norm is to put a dab on a cotton ball that is placed into the hive box, and that scented cotton ball is later easily removed.
Also, the scent should degrade/wear off over time. Does the product suggest how often you might need to re-apply it? That reapplication timeline would be guidance for how long it will take for the scent to clear out.
I'd offer pragmatic counsel that once you know when your nucs will arrive, I'd take apart the boxes and frames that you applied the product to and let them air out something like a week prior to bees arrival. Hope this helps.